Molecular Medicine

About MolMed

The research group in Molecular Medicine headed by Professor Ann-Christine Syvänen was started in 1998. After being situated at the Research Department of Uppsala University Hospital for 15 years, we moved in 2014 to the new facilities of SciLifeLab at the Biomedical Centre, BMC.

Our research group studies human diseases using modern methods for genomics and epigenetics. We develop novel methods for genome analysis, establish these methods at the department, and apply them to medical or biological problems within the group and together with clinical collaborators.
Read more about prof. Syvänen's background (also available in Swedish).  

Professor Ann-Chrsitine Syvänen is also the director of the SNP&SEQ technology platform which she started in 2001. The SNP&SEQ technology platform is part of the National Genomic Infrastructure (NGI) hosted by SciLifeLab, and offers genotyping and sequencing services to academic researchers in Sweden. Go to the SNP&SEQ technology platform's homepage for more information.

Favorite publications from the Molecular Medicine group:

  • Lindqvist CM, Lundmark A, Nordlund J, Freyhult E, Ekman D, Carlsson Almlöf J, Raine A, Övernäs E, Abrahamsson J, Frost B-M, Grandér D, Heyman M, Palle J, Forestier E, Lönnerholm G, Berglund EC, Syvänen A-C (2016) Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes. Oncotarget 7(39), 64071-64088
  • Wahlberg P, Lundmark A, Nordlund J, Busche S, Raine A, Tandre K, Rönnblom L, Sinnett D, Forestier E, Pastinen T, Lönnerholm G, Syvänen A-C (2016) DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands. Epigenomics 8(10), 1367-1387
  • Bentham J, Morris DL, Cunninghame Graham DS, Pinder CL, Tombleson P, Behrens TW, Martin J, Fairfax BP, Knight JC, Chen L, Replogle J, Syvanen A-C, Ronnblom L, Graham RR, Wither JE, Rioux JD, Alarcon-Riquelme ME, Vyse TJ (2015) Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. Nat Genet 47(12), 1457-1464
  • Lindqvist CM, Nordlund J, Ekman D, Johansson A, Moghadam BT, Raine A, ... , Palle J, Söderhäll S, Forestier E, Lönnerholm G, Syvänen A-C, Berglund EC (2015) The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome SequencingHum Mutat 36(1), 118-128
  • Nordlund J, Bäcklin C, Wahlberg P, Busche S, Berglund E, Eloranta M-L, ... , Sinnett D, Söderhäll S, Pastinen T, Gustafsson M, Lönnerholm G, Syvänen A-C (2013) Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemiaGenome Biol 14(9), r105
  • Lappalainen T, Sammeth M, Friedlander MR, t Hoen PAC, Monlong J, Rivas MA, ... , Meitinger T, Rosenstiel P, Guigo R, Gut IG, Estivill X, Dermitzakis ET (2013) Transcriptome and genome sequencing uncovers functional variation in humansNature, 501(7468), 506-511
  • Wang C, Sandling JK, Hagberg N, Berggren O, Sigurdsson S, Karlberg O, Rönnblom L, Eloranta ML, Syvänen AC (2013) Genome-wide profiling of target genes for the systemic lupus erythematosus-associated transcription factors IRF5 and STAT4. Ann Rheum Dis, 72(1), 96-103.
  • Gateva V, Sandling JK, Hom G, Taylor KE, Chung SA, Sun X, ... , Seldin MF, Rönnblom L, Criswell LA, Syvänen AC, Behrens TW, & Graham RR (2009) A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus. Nat Genet, 41(11), 1228-1233
  • Milani L, Lundmark A, Nordlund J, Kiialainen A, Flaegstad T, Jonmundsson G, Kanerva J, Schmiegelow K, Gunderson KL, Lönnerholm G, & Syvänen AC (2009) Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation. Genome Res, 19(1), 1-11
  • Hom G, Graham R, Modrek B, Taylor K, Ortmann W, Garnier S, ... , Seldin M, Rönnblom L, Syvänen A-C, Criswell L, Gregersen P, Behrens T (2008) Association of Systemic Lupus Erythematosus with C8orf13–BLK and ITGAM–ITGAX.N Engl J Med, 358(9):900-909 
  • Sigurdsson S, Nordmark G, Goring HH, Lindroos K, Wiman AC, Sturfelt G, Jonsen A, Rantapaa-Dahlqvist S, Moller B, Kere J, Koskenmies S, Widen E, Eloranta ML, Julkunen H, Kristjansdottir H, Steinsson K, Alm G, Ronnblom L, Syvänen A-C (2005) Polymorphisms in the tyrosine kinase 2 and interferon regulatory factor 5 genes are associated with systemic lupus erythematosus. Am J Hum Genet, 76:528-537

Review articles

Research group members

  Ann-Christine Syvänen
  PhD, Professor
  Research group leader
  Katarina Jonasson Vangen
  Administrative assistant
  Jonas Carlsson Almlöf
  PhD, Post doc
  Bioinformatics and Genomics
  Mathias Brännvall
  PhD, Project coordinator
  Johan Dahlberg
  PhD student
  Bioinformatics in leukemia
  Juliana Imgenberg-Kreuz
  PhD student
  Molecular biology in SLE
  Anders Lundmark
  MSc, Research engineer
  Genetic analyses and bioinformatics
  Yanara Marincevic
  PhD student
  Epigenetics and regulation of gene expression in
  leukemia
 Tom Martin
 PhD, Research engineer
 Molecular biological methods
Aikaterini Mechtidou
Project student
 Sara Nystedt
 MSc, Research engineer
 Molecular biological methods

Previous member(s):

 Eva Berglund
 PhD, Post doc
 Epigenetics in ALL
  Mårten Lindqvist
  PhD student
  Bioinformatics in leukemia

How to find us...

The research group of Molecular Medicin is located in BMC, corridors D11:2 and C10:1.

Visiting address:  Uppsala Biomedical Centre (BMC)
                             Entrance C11
 

(go here for SNP&SEQ Technology Platform contact information)

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